If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ), 'gf_id' => 'HOM05D000761', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000761' ), 'data_identifier' => 'HOM05D000761', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000761', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '768', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p10680' => 'bna', 'A02p29370' => 'bna', 'A04p04070' => 'bna', 'A04p29900' => 'bna', 'A06p46320' => 'bna', 'A07p20700' => 'bna', 'A09p13640' => 'bna', 'A09p49000' => 'bna', 'A10p15730' => 'bna', 'A10p28920' => 'bna', 'Aa31LG10G10980' => 'aar', 'Aa31LG11G300' => 'aar', 'Aa31LG2G750' => 'aar', 'Aa31LG5G19300' => 'aar', 'Aa31LG6G1390' => 'aar', 'Aa31LG9G7220' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3411' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1172' => 'aag', 'Actinidia02017' => 'ach', 'Actinidia07646' => 'ach', 'Actinidia14551' => 'ach', 'Actinidia16790' => 'ach', 'Actinidia35582' => 'ach', 'Actinidia39513' => 'ach', 'Ah.02g116520' => 'amhyb', 'Ah.06g185420' => 'amhyb', 'Ah.08g215310' => 'amhyb', 'Ah.09g233480' => 'amhyb', 'Ah.10g036290' => 'amhyb', 'Ah.12g057200' => 'amhyb', 'Ah.15g096700' => 'amhyb', 'Ah.16g103800' => 'amhyb', 'AL2G11800' => 'aly', 'AL4G38010' => 'aly', 'AL4G38040' => 'aly', 'AL5G37320' => 'aly', 'AL6G17340' => 'aly', 'AL7G35620' => 'aly', 'AL7G48250' => 'aly', 'AL8G12730' => 'aly', 'AL8G34780' => 'aly', 'Aqoxy2G00812' => 'aox', 'Aqoxy4G00315' => 'aox', 'Aqoxy5G04001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1V1HM6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.287ETB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3R34Z6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.48J8BV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.51P7XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.57KVCX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.93W2GE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BJVD1V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CWU154' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETT26Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F33GX9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I232SR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KZTX3E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LSX38T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QEK3WS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SU3JCE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YNK9KY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YT5F2Q' => 'arhy', 'AT1G63430' => 'ath', 'AT2G40270' => 'ath', 'AT3G56050' => 'ath', 'AT4G18640' => 'ath', 'AT5G07150' => 'ath', 'AT5G41180' => 'ath', 'AT5G45840' => 'ath', 'AT5G58540' => 'ath', 'ATR0012G021' => 'atr', 'ATR0174G032' => 'atr', 'ATR0665G533' => 'atr', 'ATR1126G019' => 'atr', 'ATR1126G072' => 'atr', 'Atru.chr10.1650' => 'acertr', 'Atru.chr12.79' => 'acertr', 'Atru.chr3.4147' => 'acertr', 'Atru.chr4.2903' => 'acertr', 'Atru.chr9.2219' => 'acertr', 'AUR62009699' => 'cqu', 'AUR62010613' => 'cqu', 'AUR62010614' => 'cqu', 'AUR62012287' => 'cqu', 'AUR62017258' => 'cqu', 'AUR62017261' => 'cqu', 'AUR62019582' => 'cqu', 'AUR62022928' => 'cqu', 'AUR62027694' => 'cqu', 'AUR62031222' => 'cqu', 'AUR62036247' => 'cqu', 'AUR62037550' => 'cqu', 'BcaB01g00039' => 'bca', 'BcaB01g03550' => 'bca', 'BcaB02g07905' => 'bca', 'BcaB02g08387' => 'bca', 'BcaB03g16881' => 'bca', 'BcaB04g17139' => 'bca', 'BcaB05g24527' => 'bca', 'BcaB07g30429' => 'bca', 'BcaB08g36189' => 'bca', 'BcaC02g07339' => 'bca', 'BcaC02g07370' => 'bca', 'BcaC02g09800' => 'bca', 'BcaC02g10393' => 'bca', 'BcaC02g12522' => 'bca', 'BcaC03g16791' => 'bca', 'BcaC06g31510' => 'bca', 'BcaC06g31944' => 'bca', 'BcaC06g32473' => 'bca', 'BcaC06g34391' => 'bca', 'BcaC08g44512' => 'bca', 'BcaNung06919' => 'bca', 'BNapus_Darmor_BZH_scaffold_103p00060' => 'bna', 'BNapus_Darmor_BZH_scaffold_104p00060' => 'bna', 'BolC1t01237H' => 'bol', 'BolC2t10718H' => 'bol', 'BolC3t15072H' => 'bol', 'BolC4t24477H' => 'bol', 'BolC4t25150H' => 'bol', 'BolC4t28299H' => 'bol', 'BolC6t37156H' => 'bol', 'BolC7t43456H' => 'bol', 'BolC7t45491H' => 'bol', 'BolC7t45492H' => 'bol', 'BolC8t50757H' => 'bol', 'BolC9t54541H' => 'bol', 'BolC9t57909H' => 'bol', 'BolC9t59671H' => 'bol', 'BraA01t01014Z' => 'bra', 'BraA02t07966Z' => 'bra', 'BraA03t11492Z' => 'bra', 'BraA03t14230Z' => 'bra', 'BraA04t16125Z' => 'bra', 'BraA04t18518Z' => 'bra', 'BraA06t27493Z' => 'bra', 'BraA07t29761Z' => 'bra', 'BraA09t37017Z' => 'bra', 'BraA09t40355Z' => 'bra', 'BraA10t43658Z' => 'bra', 'BraA10t44939Z' => 'bra', 'BraSC36t46102Z' => 'bra', 'C01p12600' => 'bna', 'C02p46630' => 'bna', 'C03p26890' => 'bna', 'C04p29430' => 'bna', 'C04p36450' => 'bna', 'C04p67950' => 'bna', 'C06p19640' => 'bna', 'C07p29130' => 'bna', 'C07p49900' => 'bna', 'C09p16300' => 'bna', 'C09p50520' => 'bna', 'C09p69270' => 'bna', 'CAN.G1286.6' => 'can', 'CAN.G1548.1' => 'can', 'CAN.G19.11' => 'can', 'CAN.G26.11' => 'can', 'CAN.G370.93' => 'can', 'CANSAT11G2392' => 'cansat', 'CANSAT21G0025' => 'cansat', 'CANSAT54G2373' => 'cansat', 'CARHR047920' => 'chi', 'CARHR135330' => 'chi', 'CARHR166120' => 'chi', 'CARHR176130' => 'chi', 'CARHR205990' => 'chi', 'CARHR213200' => 'chi', 'CARHR225500' => 'chi', 'CARHR272370' => 'chi', 'Carub.0002s0145' => 'cru', 'Carub.0004s2250' => 'cru', 'Carub.0005s2278' => 'cru', 'Carub.0006s0607' => 'cru', 'Carub.0007s2258' => 'cru', 'Carub.0007s3430' => 'cru', 'Carub.0008s0212' => 'cru', 'Carub.0008s1914' => 'cru', 'Ca_00444_v3' => 'car', 'Ca_05981_v3' => 'car', 'Ca_14984_v3' => 'car', 'Ca_15148_v3' => 'car', 'Ca_17545_v3' => 'car', 'Ca_17917_v3' => 'car', 'Ca_24559_v3' => 'car', 'Cc01_g14620' => 'ccan', 'Cc02_g06120' => 'ccan', 'Cc02_g15130' => 'ccan', 'Cc08_g14480' => 'ccan', 'CDE04G0780' => 'cde', 'CDE04G1580' => 'cde', 'CDE04G2733' => 'cde', 'CDE06G0330' => 'cde', 'CDE06G0913' => 'cde', 'CDE08G0438' => 'cde', 'CDE08G0470' => 'cde', 'CDE08G0612' => 'cde', 'CDE10G0452' => 'cde', 'CDE10G0667' => 'cde', 'CDE10G0976' => 'cde', 'Cfa000621' => 'cfa', 'Cfa012155' => 'cfa', 'Ciclev10014435m.g' => 'ccl', 'Ciclev10019211m.g' => 'ccl', 'Ciclev10027941m.g' => 'ccl', 'Ciclev10030902m.g' => 'ccl', 'CiPaw.01G300800' => 'cil', 'CiPaw.02G195000' => 'cil', 'CiPaw.09G070700' => 'cil', 'CiPaw.10G060000' => 'cil', 'CiPaw.11G137500' => 'cil', 'CiPaw.12G094700' => 'cil', 'CiPaw.13G073000' => 'cil', 'CiPaw.14G056300' => 'cil', 'ClCG01G002870' => 'cla', 'ClCG02G019380' => 'cla', 'ClCG03G007630' => 'cla', 'ClCG07G004430' => 'cla', 'ClCG07G008030' => 'cla', 'COL.COLO4_11069' => 'col', 'COL.COLO4_25777' => 'col', 'COL.COLO4_31277' => 'col', 'COL.COLO4_31448' => 'col', 'COL.COLO4_34437' => 'col', 'COL.COLO4_34904' => 'col', 'Cpa.g.sc19.143' => 'cpa', 'Cpa.g.sc2.392' => 'cpa', 'Cpa.g.sc202.8' => 'cpa', 'Cpa.g.sc7.79' => 'cpa', 'Cpa.g.sc7.80' => 'cpa', 'CsaV3_1G033280' => 'csa', 'CsaV3_3G005400' => 'csa', 'CsaV3_4G006010' => 'csa', 'CsaV3_5G002960' => 'csa', 'CsaV3_5G010350' => 'csa', 'CsaV3_6G016000' => 'csa', 'CSS0001390' => 'camsi', 'CSS0003082' => 'camsi', 'CSS0007325' => 'camsi', 'CSS0009188' => 'camsi', 'CSS0010140' => 'camsi', 'CSS0014908' => 'camsi', 'CSS0017628' => 'camsi', 'CSS0018121' => 'camsi', 'CSS0020856' => 'camsi', 'CSS0024350' => 'camsi', 'CSS0024893' => 'camsi', 'CSS0034934' => 'camsi', 'CSS0035741' => 'camsi', 'CSS0038507' => 'camsi', 'DCAR_000602' => 'dca', 'DCAR_005213' => 'dca', 'DCAR_007942' => 'dca', 'DCAR_008405' => 'dca', 'DCAR_018215' => 'dca', 'DCAR_024811' => 'dca', 'DCAR_027993' => 'dca', 'Dinv09652' => 'din', 'Dinv10594' => 'din', 'Dinv16787' => 'din', 'Dinv28674' => 'din', 'Dinv37659' => 'din', 'Dinv38956' => 'din', 'Dinv40692' => 'din', 'Dinv40693' => 'din', 'Duzib084G0230' => 'dzi', 'Duzib106G0150' => 'dzi', 'Duzib114G0028' => 'dzi', 'Duzib128G0627' => 'dzi', 'Duzib160G0402' => 'dzi', 'Duzib168G2162' => 'dzi', 'Duzib170G0959' => 'dzi', 'Duzib192G0581' => 'dzi', 'Duzib205G1385' => 'dzi', 'Duzib235G0869' => 'dzi', 'ECA233G4867' => 'eca', 'ECA234G4192' => 'eca', 'ECA238G3316' => 'eca', 'ECA240G1996' => 'eca', 'ECA246G1783' => 'eca', 'ECA248G2117' => 'eca', 'ECA248G3677' => 'eca', 'EL10Ac1g01599' => 'bvu', 'EL10Ac2g04879' => 'bvu', 'EL10Ac4g08351' => 'bvu', 'EL10Ac5g12780' => 'bvu', 'EL10Ac7g15888' => 'bvu', 'EL10Ac8g20586' => 'bvu', 'Eucgr.B02229' => 'egr', 'Eucgr.D01865' => 'egr', 'Eucgr.E02755' => 'egr', 'Eucgr.G03081' => 'egr', 'Eucgr.L02854' => 'egr', 'Eucgr.L03283' => 'egr', 'FAN01G0612' => 'fan', 'FAN03G2092' => 'fan', 'FAN04G1116' => 'fan', 'FAN06G4811' => 'fan', 'FAN08G2026' => 'fan', 'FAN10G1767' => 'fan', 'FAN11G1230' => 'fan', 'FAN11G2982' => 'fan', 'FAN13G0187' => 'fan', 'FAN16G0397' => 'fan', 'FAN16G0576' => 'fan', 'FAN18G4383' => 'fan', 'FAN21G1302' => 'fan', 'FAN21G3115' => 'fan', 'FAN25G2387' => 'fan', 'FAN25G2483' => 'fan', 'FvH4_3g07660' => 'fve', 'FvH4_3g39310' => 'fve', 'FvH4_5g02060' => 'fve', 'FvH4_7g24950' => 'fve', 'Glyma.01G218800' => 'gma', 'Glyma.02G229500' => 'gma', 'Glyma.02G263900' => 'gma', 'Glyma.05G158800' => 'gma', 'Glyma.05G206300' => 'gma', 'Glyma.08G013200' => 'gma', 'Glyma.08G116600' => 'gma', 'Glyma.09G121300' => 'gma', 'Glyma.11G024700' => 'gma', 'Glyma.11G167100' => 'gma', 'Glyma.11G232200' => 'gma', 'Glyma.12G167901' => 'gma', 'Glyma.13G228700' => 'gma', 'Glyma.14G057400' => 'gma', 'Glyma.14G197000' => 'gma', 'Glyma.15G083800' => 'gma', 'Glyma.18G025100' => 'gma', 'Glyma.18G059600' => 'gma', 'Gohir.A03G015700' => 'ghi', 'Gohir.A05G108100' => 'ghi', 'Gohir.A05G331400' => 'ghi', 'Gohir.A06G162300' => 'ghi', 'Gohir.A06G200100' => 'ghi', 'Gohir.A08G180700' => 'ghi', 'Gohir.A08G202500' => 'ghi', 'Gohir.A09G074400' => 'ghi', 'Gohir.A09G192800' => 'ghi', 'Gohir.A10G238700' => 'ghi', 'Gohir.D02G144433' => 'ghi', 'Gohir.D03G152200' => 'ghi', 'Gohir.D04G070000' => 'ghi', 'Gohir.D05G108300' => 'ghi', 'Gohir.D06G167800' => 'ghi', 'Gohir.D06G207400' => 'ghi', 'Gohir.D08G199400' => 'ghi', 'Gohir.D08G219400' => 'ghi', 'Gohir.D09G074200' => 'ghi', 'Gohir.D09G187000' => 'ghi', 'Gohir.D10G250600' => 'ghi', 'Gohir.D11G179700' => 'ghi', 'Gohir.D12G024900' => 'ghi', 'Gorai.003G159600' => 'gra', 'Gorai.004G210200' => 'gra', 'Gorai.004G233500' => 'gra', 'Gorai.005G088200' => 'gra', 'Gorai.005G161700' => 'gra', 'Gorai.006G089100' => 'gra', 'Gorai.006G209800' => 'gra', 'Gorai.009G112500' => 'gra', 'Gorai.010G195700' => 'gra', 'Gorai.010G241800' => 'gra', 'Gorai.011G291000' => 'gra', 'Gorai.012G078500' => 'gra', 'GSVIVG01014189001' => 'vvi', 'GSVIVG01014190001' => 'vvi', 'GSVIVG01019778001' => 'vvi', 'GSVIVG01021228001' => 'vvi', 'GSVIVG01024683001' => 'vvi', 'GSVIVG01024684001' => 'vvi', 'GSVIVG01032772001' => 'vvi', 'HanXRQChr01g0011581' => 'han', 'HanXRQChr03g0071801' => 'han', 'HanXRQChr06g0165661' => 'han', 'HanXRQChr07g0187851' => 'han', 'HanXRQChr07g0203101' => 'han', 'HanXRQChr09g0252141' => 'han', 'HanXRQChr12g0384511' => 'han', 'HanXRQChr13g0416191' => 'han', 'HanXRQChr16g0518291' => 'han', 'Haze_06214' => 'cav', 'Haze_08872' => 'cav', 'Haze_08873' => 'cav', 'Haze_17262' => 'cav', 'Haze_24383' => 'cav', 'Hma1.2p1_0084F.1_g043330' => 'hma', 'Hma1.2p1_0084F.1_g043345' => 'hma', 'Hma1.2p1_0146F.1_g065510' => 'hma', 'Hma1.2p1_0377F.1_g139250' => 'hma', 'Hma1.2p1_0841F.1_g226780' => 'hma', 'Hma1.2p1_1922F.1_g307590' => 'hma', 'HPP92_001125' => 'vpl', 'HPP92_001498' => 'vpl', 'HPP92_007566' => 'vpl', 'HPP92_019016' => 'vpl', 'HPP92_019100' => 'vpl', 'HPP92_020190' => 'vpl', 'HPP92_026756' => 'vpl', 'Hund05041' => 'sun', 'Hund11486' => 'sun', 'Hund13885' => 'sun', 'Hund13886' => 'sun', 'Hund14750' => 'sun', 'Hund15894' => 'sun', 'Hund21169' => 'sun', 'Lalb_Chr05g0211861' => 'lal', 'Lalb_Chr05g0224881' => 'lal', 'Lalb_Chr07g0186421' => 'lal', 'Lalb_Chr08g0231551' => 'lal', 'Lalb_Chr09g0321071' => 'lal', 'Lalb_Chr11g0075061' => 'lal', 'Lalb_Chr12g0205071' => 'lal', 'Lalb_Chr13g0295161' => 'lal', 'Lalb_Chr15g0086131' => 'lal', 'Lalb_Chr18g0051241' => 'lal', 'Lalb_Chr18g0054591' => 'lal', 'Lalb_Chr20g0117501' => 'lal', 'Lalb_Chr23g0277051' => 'lal', 'Lj1A129G72' => 'lonja', 'Lj1A959T87' => 'lonja', 'Lj1C1191T14' => 'lonja', 'Lj1g0009374' => 'lja', 'Lj2A188T37' => 'lonja', 'Lj2C1088T10' => 'lonja', 'Lj2C302T3' => 'lonja', 'Lj4g0002308' => 'lja', 'Lj4g0007820' => 'lja', 'Lj4g0016552' => 'lja', 'Lj6g0003778' => 'lja', 'Lj6g0009042' => 'lja', 'Lj6g0011027' => 'lja', 'Lj8A229T68' => 'lonja', 'Lj8A232G66' => 'lonja', 'LjContig00312_ERROPOS870357g0014846' => 'lja', 'LjContig00357g0001724' => 'lja', 'Lsat_1_v5_gn_1_16180' => 'lsa', 'Lsat_1_v5_gn_2_124361' => 'lsa', 'Lsat_1_v5_gn_3_7860' => 'lsa', 'Lsat_1_v5_gn_4_48900' => 'lsa', 'Lsat_1_v5_gn_5_173301' => 'lsa', 'Lsat_1_v5_gn_6_6900' => 'lsa', 'Lsat_1_v5_gn_6_86861' => 'lsa', 'Manes.01G063100' => 'mes', 'Manes.02G023500' => 'mes', 'Manes.05G014704' => 'mes', 'Manes.07G132800' => 'mes', 'Manes.07G132902' => 'mes', 'Manes.10G009600' => 'mes', 'Manes.11G152091' => 'mes', 'Manes.11G152134' => 'mes', 'Manes.11G152148' => 'mes', 'Manes.11G152172' => 'mes', 'Manes.11G152182' => 'mes', 'Manes.16G041000' => 'mes', 'Manes.17G056800' => 'mes', 'Manes.18G136200' => 'mes', 'Mapoly0062s0114' => 'mpo', 'Mapoly0093s0066' => 'mpo', 'Mapoly0099s0061' => 'mpo', 'MBI03_g43894_MAGBIO' => 'mbi', 'MBI06_g08609_MAGBIO' => 'mbi', 'MBI06_g45398_MAGBIO' => 'mbi', 'MBI07_g09560_MAGBIO' => 'mbi', 'MBI15_g40302_MAGBIO' => 'mbi', 'MBI17_g23517_MAGBIO' => 'mbi', 'MBI17_g33583_MAGBIO' => 'mbi', 'MBI17_g43539_MAGBIO' => 'mbi', 'MD01G1156900' => 'mdo', 'MD03G1062400' => 'mdo', 'MD05G1299200' => 'mdo', 'MD06G1079300' => 'mdo', 'MD10G1278700' => 'mdo', 'MD11G1066000' => 'mdo', 'MD14G1101900' => 'mdo', 'Medtr1g084790' => 'mtr', 'Medtr2g016320' => 'mtr', 'Medtr2g016360' => 'mtr', 'Medtr3g071480' => 'mtr', 'Medtr3g465470' => 'mtr', 'Medtr5g010440' => 'mtr', 'Medtr5g098190' => 'mtr', 'Medtr8g086390' => 'mtr', 'Medtr8g098510' => 'mtr', 'MELO3C002659.2' => 'cme', 'MELO3C005660.2' => 'cme', 'MELO3C016348.2' => 'cme', 'MELO3C018371.2' => 'cme', 'MELO3C026836.2' => 'cme', 'Migut.A00785' => 'egut', 'Migut.E01105' => 'egut', 'Migut.F00653' => 'egut', 'Migut.F01476' => 'egut', 'Migut.M01029' => 'egut', 'MSTRG.13225' => 'ama', 'MSTRG.16156' => 'ama', 'MSTRG.195' => 'ama', 'MSTRG.25593' => 'ama', 'MSTRG.27308' => 'ama', 'MSTRG.8934' => 'ama', 'Nitab4.5_0000058g0200' => 'nta', 'Nitab4.5_0000165g0150' => 'nta', 'Nitab4.5_0000360g0170' => 'nta', 'Nitab4.5_0000462g0200' => 'nta', 'Nitab4.5_0000605g0070' => 'nta', 'Nitab4.5_0000666g0130' => 'nta', 'Nitab4.5_0002270g0040' => 'nta', 'Nitab4.5_0002270g0050' => 'nta', 'Nitab4.5_0002776g0090' => 'nta', 'Nitab4.5_0003475g0010' => 'nta', 'Nitab4.5_0003711g0070' => 'nta', 'Nitab4.5_0005621g0070' => 'nta', 'Nitab4.5_0008430g0020' => 'nta', 'Nitab4.5_0009194g0010' => 'nta', 'Nn1g01473' => 'nnu', 'Nn1g04461' => 'nnu', 'Nn1g04465' => 'nnu', 'Nn1g09162' => 'nnu', 'Nn2g10955' => 'nnu', 'Nn2g13223' => 'nnu', 'Nn3g20420' => 'nnu', 'Nn3g20421' => 'nnu', 'Nn6g33485' => 'nnu', 'Oeu001079.2' => 'oeu', 'Oeu009072.1' => 'oeu', 'Oeu009179.1' => 'oeu', 'Oeu011059.1' => 'oeu', 'Oeu042426.1' => 'oeu', 'Oeu043112.1' => 'oeu', 'Oeu049282.2' => 'oeu', 'Oeu049734.1' => 'oeu', 'Oeu056647.1' => 'oeu', 'Os01g0206800' => 'osa', 'Os01g0674800' => 'osa', 'Os03g0294800' => 'osa', 'Os04g0534166' => 'osa', 'Os04g0534200' => 'osa', 'Os04g0683600' => 'osa', 'Os05g0353500' => 'osa', 'Os05g0471000' => 'osa', 'Os05g0560300' => 'osa', 'Os07g0693000' => 'osa', 'Os12g0105800' => 'osa', 'Peaxi162Scf00119g00412' => 'pax', 'Peaxi162Scf00284g00061' => 'pax', 'Peaxi162Scf00734g00066' => 'pax', 'Peaxi162Scf00768g00114' => 'pax', 'Peaxi162Scf00854g00049' => 'pax', 'Peaxi162Scf01294g00332' => 'pax', 'PGR031G3444' => 'pgr', 'PGR042G1799' => 'pgr', 'PGR102G1458' => 'pgr', 'PGR102G2235' => 'pgr', 'PGR142G2926' => 'pgr', 'PGSC0003DMG400003175' => 'stu', 'PGSC0003DMG400004384' => 'stu', 'PGSC0003DMG400004972' => 'stu', 'PGSC0003DMG400010230' => 'stu', 'PGSC0003DMG400010947' => 'stu', 'PGSC0003DMG400012218' => 'stu', 'PGSC0003DMG400030035' => 'stu', 'Phvul.001G245300' => 'pvu', 'Phvul.002G156600' => 'pvu', 'Phvul.002G238900' => 'pvu', 'Phvul.002G287900' => 'pvu', 'Phvul.006G071600' => 'pvu', 'Phvul.006G175100' => 'pvu', 'Phvul.008G221900' => 'pvu', 'Phvul.008G258700' => 'pvu', 'Potri.001G106600' => 'ptr', 'Potri.001G280200' => 'ptr', 'Potri.003G124800' => 'ptr', 'Potri.004G058100' => 'ptr', 'Potri.008G072100' => 'ptr', 'Potri.009G075400' => 'ptr', 'Potri.010G185300' => 'ptr', 'Potri.011G067400' => 'ptr', 'Pp3c14_15360' => 'ppa', 'Pp3c17_16210' => 'ppa', 'Pp3c1_15010' => 'ppa', 'Pp3c1_15011' => 'ppa', 'Pp3c2_23100' => 'ppa', 'Pp3c2_29720' => 'ppa', 'Pp3c7_22250' => 'ppa', 'Prupe.2G254500' => 'ppe', 'Prupe.4G062600' => 'ppe', 'Prupe.5G097500' => 'ppe', 'Prupe.6G052400' => 'ppe', 'Psat0s748g0080' => 'psa', 'Psat1g197040' => 'psa', 'Psat2g030800' => 'psa', 'Psat5g131240' => 'psa', 'Psat5g157360' => 'psa', 'Psat7g034600' => 'psa', 'Psat7g070960' => 'psa', 'PSO017G1122' => 'pso', 'PSO063G0784' => 'pso', 'PSO063G2339' => 'pso', 'PSO339G1504' => 'pso', 'PSO349G0330' => 'pso', 'PSO478G2420' => 'pso', 'PSO541G1914' => 'pso', 'PSO675G8486' => 'pso', 'PSO782G2062' => 'pso', 'PSO782G5213' => 'pso', 'PSO801G0476' => 'pso', 'QL01p003134' => 'qlo', 'QL01p039620' => 'qlo', 'QL05p047732' => 'qlo', 'QL08p063584' => 'qlo', 'QL12p018315' => 'qlo', 'RcHm_v2.0_Chr1g0370831' => 'rch', 'RcHm_v2.0_Chr4g0424991' => 'rch', 'RcHm_v2.0_Chr5g0011021' => 'rch', 'RcHm_v2.0_Chr5g0070741' => 'rch', 'RcHm_v2.0_Chr6g0248191' => 'rch', 'RcHm_v2.0_Chr7g0197371' => 'rch', 'RcHm_v2.0_Chr7g0198241' => 'rch', 'Rhsim02G0143600' => 'rsi', 'Rhsim02G0227200' => 'rsi', 'Rhsim03G0145900' => 'rsi', 'Rhsim09G0179500' => 'rsi', 'Rhsim13G0066400' => 'rsi', 'Rhsim13G0189500' => 'rsi', 'RhsimUnG0098700' => 'rsi', 'Sabra01G0080600' => 'sbr', 'Sabra03G0088400' => 'sbr', 'Sabra04G0037700' => 'sbr', 'Sabra08G0053300' => 'sbr', 'Sabra09G0057300' => 'sbr', 'Sabra10G0142500' => 'sbr', 'Sabra11G0050500' => 'sbr', 'Sabra16G0173700' => 'sbr', 'SalBow1G4746' => 'sbo', 'SalBow6G4208' => 'sbo', 'SalBow7G3557' => 'sbo', 'SalBow8G0215' => 'sbo', 'Sc01g0009460' => 'sci', 'Sc03g0010540' => 'sci', 'Sc11g0005240' => 'sci', 'Sc17g0005700' => 'sci', 'Sc21g0005040' => 'sci', 'Sed0019611' => 'sed', 'Sed0019878' => 'sed', 'Sed0021064' => 'sed', 'Sed0021224' => 'sed', 'Sed0022252' => 'sed', 'Sed0027985' => 'sed', 'SEGI_03717' => 'sgi', 'SEGI_29613' => 'sgi', 'SEGI_35533' => 'sgi', 'SEGI_36402' => 'sgi', 'SEGI_40162' => 'sgi', 'SGA_v2.0_scaffold144G35953' => 'sas', 'SGA_v2.0_scaffold16G07706' => 'sas', 'SGA_v2.0_scaffold16G07717' => 'sas', 'SGA_v2.0_scaffold1G00060' => 'sas', 'SGA_v2.0_scaffold21G09337' => 'sas', 'SGA_v2.0_scaffold253G45124' => 'sas', 'SGA_v2.0_scaffold385G50470' => 'sas', 'SGA_v2.0_scaffold60G20970' => 'sas', 'SHI07114' => 'shi', 'SHI07115' => 'shi', 'SHI16699' => 'shi', 'SHI19190' => 'shi', 'SHI19191' => 'shi', 'SMO143G0245' => 'smo', 'SMO167G0027' => 'smo', 'SMO270G0105' => 'smo', 'SMO347G0036' => 'smo', 'SMO347G0077' => 'smo', 'Solyc02g021590.3' => 'sly', 'Solyc02g076660.3' => 'sly', 'Solyc03g006130.3' => 'sly', 'Solyc06g051030.3' => 'sly', 'Solyc08g080830.3' => 'sly', 'Solyc12g056300.3' => 'sly', 'Sopen02g006150' => 'spe', 'Sopen02g021590' => 'spe', 'Sopen03g002140' => 'spe', 'Sopen06g016850' => 'spe', 'Sopen08g029130' => 'spe', 'Sopen12g028850' => 'spe', 'Sp2g01180' => 'spa', 'Sp2g10760' => 'spa', 'Sp4g22600' => 'spa', 'Sp5g06490' => 'spa', 'Sp6g20230' => 'spa', 'Sp7g00730' => 'spa', 'Sp7g15380' => 'spa', 'SpUn0010_0210' => 'spa', 'TAR369G0128' => 'tar', 'TAR374G1707' => 'tar', 'TAR375G0100' => 'tar', 'TAR622G0812' => 'tar', 'TAR623G0384' => 'tar', 'TAR623G1239' => 'tar', 'TAR626G1611' => 'tar', 'TAR627G0125' => 'tar', 'TAR629G1411' => 'tar', 'TAR633G2782' => 'tar', 'THA.LOC104806157' => 'tha', 'THA.LOC104809385' => 'tha', 'THA.LOC104810698' => 'tha', 'THA.LOC104811464' => 'tha', 'THA.LOC104812876' => 'tha', 'THA.LOC104823581' => 'tha', 'THA.LOC104824332' => 'tha', 'Thecc.03G276400' => 'tca', 'Thecc.06G169100' => 'tca', 'Thecc.09G354000' => 'tca', 'Thecc.10G012200' => 'tca', 'Thhalv10000802m.g' => 'esa', 'Thhalv10005911m.g' => 'esa', 'Thhalv10013141m.g' => 'esa', 'Thhalv10013281m.g' => 'esa', 'Thhalv10015840m.g' => 'esa', 'Thhalv10016554m.g' => 'esa', 'Thhalv10023393m.g' => 'esa', 'Thhalv10024616m.g' => 'esa', 'Thhalv10027677m.g' => 'esa', 'TPR.G12948' => 'tpr', 'TPR.G24359' => 'tpr', 'TPR.G27341' => 'tpr', 'TPR.G27343' => 'tpr', 'TPR.G27364' => 'tpr', 'TPR.G30160' => 'tpr', 'TPR.G32908' => 'tpr', 'TPR.G35737' => 'tpr', 'TPR.G38384' => 'tpr', 'TPR.G6628' => 'tpr', 'TWI09G1449' => 'twi', 'TWI31G0256' => 'twi', 'TWI38G1255' => 'twi', 'TWI38G1474' => 'twi', 'TWI60G0369' => 'twi', 'TWI63G0610' => 'twi', 'TWI73G0012' => 'twi', 'TWI81G0264' => 'twi', 'unitig_37.g11905' => 'ugi', 'vmacro02940' => 'vma', 'vmacro03925' => 'vma', 'vmacro06953' => 'vma', 'vmacro10021' => 'vma', 'vmacro11311' => 'vma', 'vmacro16058' => 'vma', 'vmacro17694' => 'vma', 'VMungo0251G0318' => 'vmu', 'VMungo0251G3476' => 'vmu', 'VMungo0540G1182' => 'vmu', 'VMungo0540G2382' => 'vmu', 'VMungo0647G0425' => 'vmu', 'VMungo0647G2547' => 'vmu', 'VMungo1215G1984' => 'vmu', 'VMungo1383G1153' => 'vmu', 'Zm00001eb013610' => 'zma', 'Zm00001eb065760' => 'zma', 'Zm00001eb075560' => 'zma', 'Zm00001eb111940' => 'zma', 'Zm00001eb120360' => 'zma', 'Zm00001eb132630' => 'zma', 'Zm00001eb157010' => 'zma', 'Zm00001eb286460' => 'zma', 'Zm00001eb290130' => 'zma', 'Zm00001eb295670' => 'zma', 'Zm00001eb360180' => 'zma' ) $gf_id = 'HOM05D000761' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000761' ) $data_identifier = 'HOM05D000761' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 8, 'aly' => (int) 9, 'aox' => (int) 3, 'arhy' => (int) 18, 'ath' => (int) 8, 'atr' => (int) 5, 'acertr' => (int) 5, 'cqu' => (int) 12, 'bca' => (int) 21, 'bol' => (int) 14, 'bra' => (int) 13, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 8, 'cru' => (int) 8, 'car' => (int) 7, 'ccan' => (int) 4, 'cde' => (int) 11, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 5, 'csa' => (int) 6, 'camsi' => (int) 14, 'dca' => (int) 7, 'din' => (int) 8, 'dzi' => (int) 10, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 6, 'fan' => (int) 16, 'fve' => (int) 4, 'gma' => (int) 18, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 13, 'lonja' => (int) 8, 'lja' => (int) 9, 'lsa' => (int) 7, 'mes' => (int) 14, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mdo' => (int) 7, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 5, 'ama' => (int) 6, 'nta' => (int) 14, 'nnu' => (int) 9, 'oeu' => (int) 9, 'osa' => (int) 11, 'pax' => (int) 6, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 8, 'ptr' => (int) 8, 'ppa' => (int) 7, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 11, 'qlo' => (int) 5, 'rch' => (int) 7, 'rsi' => (int) 7, 'sbr' => (int) 8, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 6, 'sgi' => (int) 5, 'sas' => (int) 8, 'shi' => (int) 5, 'smo' => (int) 5, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 8, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 4, 'esa' => (int) 9, 'tpr' => (int) 10, 'twi' => (int) 8, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 8, 'zma' => (int) 11 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb360180' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1